3DB2

Crystal structure of a putative nadph-dependent oxidoreductase (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of putative NADPH-dependent oxidoreductase (ZP_01370612.1) from DESULFITOBACTERIUM HAFNIENSE DCB-2 at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative NADPH-dependent oxidoreductase
A, B, C
354Desulfitobacterium hafniense (strain DCB-2 / DSM 10664)Mutation(s): 0 
Find proteins for B8FRW3 (Desulfitobacterium hafniense (strain DCB-2 / DSM 10664))
Go to UniProtKB:  B8FRW3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 104.616α = 90.00
b = 104.616β = 90.00
c = 173.372γ = 120.00
Software Package:
Software NamePurpose
autoSHARPphasing
MolProbitymodel building
MOSFLMdata reduction
SHELXDphasing
PHENIXrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
SHELXphasing
SHELXL-97refinement
SHELXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-06-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.2: 2014-11-12
    Type: Structure summary
  • Version 1.3: 2017-10-25
    Type: Author supporting evidence, Refinement description
  • Version 1.4: 2019-07-24
    Type: Data collection, Derived calculations, Refinement description