Download MendeleyCrsytal structure of a phosphatase from a toxoplasma gondii
Damodharan, L., Sauder, J.M., Burley, S.K., Swaminathan, S.To be published.
3D8K
Crystal structure of a phosphatase from a toxoplasma gondii
- PDB DOI: 10.2210/pdb3D8K/pdb
- Classification: HYDROLASE
- Organism(s): Toxoplasma gondii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-05-23 Released: 2008-06-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.71 Å
- R-Value Free: 0.304
- R-Value Work: 0.251
- R-Value Observed: 0.251
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein phosphatase 2C | A, B, C, D | 377 | Toxoplasma gondii | Mutation(s): 0 Gene Names: pp2c |  |
UniProt | |||||
Find proteins for A4GX63 (Toxoplasma gondii) Explore A4GX63 Go to UniProtKB: A4GX63 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A4GX63 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth B], G [auth C], H [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.71 Å
- R-Value Free: 0.304
- R-Value Work: 0.251
- R-Value Observed: 0.251
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.882 | α = 90 |
| b = 169.052 | β = 104.47 |
| c = 87.012 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SOLVE | phasing |
| SHARP | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2008-06-17 Deposition Author(s): Damodharan, L., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-06-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-05-02
Changes: Structure summary - Version 1.3: 2018-01-24
Changes: Database references - Version 1.4: 2018-11-14
Changes: Data collection, Database references - Version 1.5: 2019-01-16
Changes: Data collection, Structure summary - Version 1.6: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
