3D7L | pdb_00003d7l

The crystal structure of the protein lin1944 from Listeria innocua .

PDB DOI: https://doi.org/10.2210/pdb3D7L/pdb

Classification: structural genomics, unknown function
Organism(s): Listeria innocua
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-05-21 Released: 2008-07-22
Deposition Author(s): Tan, K., Bigelow, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.06 Å
R-Value Free:
0.206 (Depositor), 0.209 (DCC)
R-Value Work:
0.163 (Depositor), 0.167 (DCC)
R-Value Observed:
0.165 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3D7L

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the protein lin1944 from Listeria innocua.

Tan, K., Bigelow, L., Gu, M., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 194.01 kDa
Atom Count: 14,457
Modeled Residue Count: 1,804
Deposited Residue Count: 1,818
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin1944 protein	A, B, C, D, E A, B, C, D, E, F, G, H, I	202	Listeria innocua	Mutation(s): 0 Gene Names: lin1944
UniProt
Find proteins for Q92AH8 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q92AH8 Go to UniProtKB: Q92AH8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92AH8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.06 Å
R-Value Free: 0.206 (Depositor), 0.209 (DCC)
R-Value Work: 0.163 (Depositor), 0.167 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.815	α = 90
b = 128.2	β = 90
c = 404.737	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
SHELXD	phasing
MLPHARE	phasing
DM	phasing
RESOLVE	phasing
HKL-3000	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-22

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2008-07-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.