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Download EndnoteCrystal structure of putative glucan synthesis regulator of Smi1/Knr4 family (YP_211376.1) from Bacteroides fragilis NCTC 9343 at 1.45 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3D5P
CRYSTAL STRUCTURE OF A PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY (BF1740) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.45 A RESOLUTION
- DOI: 10.2210/pdb3D5P/pdb
- Classification: GENE REGULATION
- Organism(s): Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
- Expression System: Escherichia coli
- Deposited: 2008-05-16 Released: 2008-07-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.175
- R-Value Work: 0.156
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| putative glucan synthesis regulator of Smi1/Knr4 family | A, B | 144 | Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) | Mutation(s): 0 |
Find proteins for Q5LEL2 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)) Go to UniProtKB: Q5LEL2 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | A, B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | B | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.175
- R-Value Work: 0.156
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M33D5P Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 57.058 | α = 90.00 |
| b = 69.508 | β = 90.00 |
| c = 75.093 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHELXD | phasing |
| autoSHARP | phasing |
| REFMAC | refinement |
| PHENIX | refinement |
| SCALA | data scaling |
Entry History
Deposition Data
- Deposited Date: 2008-05-16
- Released Date: 2008-07-15
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2008-07-15
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
