3D5F

Crystal Structure of PPAR-delta complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.278 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

PPAR-Delta Activation Contributes to Neuroprotectio Against Thapsigargin-Induced SH-SY5Y Cell Death

Iwashita, A.Mihara, K.Amano, Y.Orita, M.Matsuoka, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor delta
A, B
267Homo sapiensMutation(s): 1 
Gene Names: PPARD (NR1C2, PPARB)
Find proteins for Q03181 (Homo sapiens)
Go to Gene View: PPARD
Go to UniProtKB:  Q03181
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
L41
Query on L41

Download SDF File 
Download CCD File 
A, B
{4-[3-(4-acetyl-3-hydroxy-2-propylphenoxy)propoxy]phenoxy}acetic acid
C22 H26 O7
HBBVCKCCQCQCTJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
L41EC50: 3800 nM (94) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.278 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 39.456α = 90.00
b = 92.829β = 98.02
c = 96.454γ = 90.00
Software Package:
Software NamePurpose
CrystalCleardata reduction
PDB_EXTRACTdata extraction
CrystalCleardata scaling
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-05-16 
  • Released Date: 2008-06-03 
  • Deposition Author(s): Amano, Y.

Revision History 

  • Version 1.0: 2008-06-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance