Download MendeleyCrystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution
Balasubramanian, M., Sathya Moorthy, P., Neelagandan, K., Ponnuswamy, M.N.To be published.
3D4X
Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution
- PDB DOI: 10.2210/pdb3D4X/pdb
- Classification: Oxygen storage, Oxygen transport
- Organism(s): Felis catus
- Mutation(s): No
- Deposited: 2008-05-15 Released: 2009-05-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.258
- R-Value Work: 0.188
- R-Value Observed: 0.195
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit alpha | A, C | 141 | Felis catus | Mutation(s): 0 Gene Names: HBA |  |
UniProt | |||||
Find proteins for P07405 (Felis catus) Explore P07405 Go to UniProtKB: P07405 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07405 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit beta-A/B | B, D | 145 | Felis catus | Mutation(s): 0 Gene Names: HBB |  |
UniProt | |||||
Find proteins for P07412 (Felis catus) Explore P07412 Go to UniProtKB: P07412 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07412 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | E [auth A], F [auth B], G [auth C], H [auth D] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.258
- R-Value Work: 0.188
- R-Value Observed: 0.195
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.045 | α = 90 |
| b = 74.195 | β = 102.8 |
| c = 72.272 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345dtb | data collection |
| AUTOMAR | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2009-05-19 Deposition Author(s): Balasubramanian, M., Sathya Moorthy, P., Neelagandan, K., Ponnuswamy, M.N.
Revision History (Full details and data files)
- Version 1.0: 2009-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2016-12-21
Changes: Other - Version 1.3: 2019-12-18
Changes: Derived calculations
