3D1P

Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.124 
  • R-Value Work: 0.108 
  • R-Value Observed: 0.109 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae.

Nocek, B.Evdokimova, E.Kudritska, M.Savchenko, A.Edwards, A.M.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative thiosulfate sulfurtransferase YOR285WA139Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: YOR285W
EC: 2.8.1.1 (PDB Primary Data), 2.8.1 (UniProt)
Find proteins for Q12305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12305 
Go to UniProtKB:  Q12305
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.124 
  • R-Value Work: 0.108 
  • R-Value Observed: 0.109 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.343α = 90
b = 37.429β = 108.86
c = 52.198γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
SHELXDphasing
ARP/wARPmodel building
MLPHAREphasing
CCP4phasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-07-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance