3CZM

T. Gondii bradyzoite-specific LDH (LDH2) in complex with NAD and OXQ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

T. Gondii bradyzoite-specific LDH (LDH2) in complex with NAD and OXQ

Wilson, D.K.Susko, M.S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
L-lactate dehydrogenaseA, B326Toxoplasma gondiiMutation(s): 1 
Gene Names: Lactate Dehydrogenase
EC: 1.1.1.27
UniProt
Find proteins for Q27797 (Toxoplasma gondii)
Explore Q27797 
Go to UniProtKB:  Q27797
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
C [auth A], E [auth B]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
OXQ
Query on OXQ

Download Ideal Coordinates CCD File 
D [auth A], F [auth B]4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID
C3 H2 N2 O4
IBRWUZLLHSXPKL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.949α = 90
b = 140.949β = 90
c = 75.01γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
EPMRphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-06-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance