3CZH

Crystal structure of CYP2R1 in complex with vitamin D2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of CYP2R1 in complex with vitamin D2.

Strushkevich, N.V.Tempel, W.Gilep, A.A.Loppnau, P.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Wilkstrom, M.Bochkarev, A.Park, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytochrome P450 2R1
A, B
481Homo sapiensMutation(s): 0 
Gene Names: CYP2R1
EC: 1.14.14.24
Find proteins for Q6VVX0 (Homo sapiens)
Go to Gene View: CYP2R1
Go to UniProtKB:  Q6VVX0
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

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A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
BCD
Query on BCD

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A, B
BETA-CYCLODEXTRIN
CYCLO-HEPTA-AMYLOSE
C42 H70 O35
WHGYBXFWUBPSRW-FOUAGVGXSA-N
 Ligand Interaction
HEM
Query on HEM

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A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
D2V
Query on D2V

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A, B
(3S,5Z,7E,22E)-9,10-secoergosta-5,7,10,22-tetraen-3-ol
Vitamin D2, Ergocalciferol, Deltalin
C28 H44 O
MECHNRXZTMCUDQ-RKHKHRCZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.205 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 137.361α = 90.00
b = 163.393β = 90.00
c = 152.289γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
REFMACphasing
PDB_EXTRACTdata extraction
HKL-3000data reduction
REFMACrefinement
SCALEPACKdata scaling
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-08-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description