3CVW

Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.272 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure and mechanism of a cofactor f0 accelerated (6-4) photolyase from the fruit fly

Maul, M.J.Barends, T.Glas, A.F.Cryle, M.J.Schneider, S.Domratcheva, T.Schlichting, I.Carell, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
RE11660p
A
543Drosophila melanogasterMutation(s): 1 
Gene Names: phr6-4
Find proteins for Q8SXK5 (Drosophila melanogaster)
Go to UniProtKB:  Q8SXK5
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3')C15N/A
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')D15N/A
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download SDF File 
Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
FO1
Query on FO1

Download SDF File 
Download CCD File 
A
1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol
7,8-didemethyl-8-hydroxy-5-deazariboflavin
C16 H17 N3 O7
AUEILLWDYUBWCM-XQQFMLRXSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
64T
Query on 64T
C
DNA LINKINGC10 H17 N2 O9 PDT
5PY
Query on 5PY
C
DNA LINKINGC10 H15 N2 O7 PDT
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.272 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 86.470α = 90.00
b = 89.510β = 90.00
c = 89.340γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
MAR345data collection
XSCALEdata scaling
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-10-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description