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Download EndnoteCrystal structure of putative phosphoheptose isomerase (NP_244191.1) from Bacillus halodurans at 2.00 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3CVJ
Crystal structure of a putative phosphoheptose isomerase (bh3325) from bacillus halodurans c-125 at 2.00 A resolution
- DOI: 10.2210/pdb3CVJ/pdb
- Classification: ISOMERASE
- Organism(s): Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
- Expression System: Escherichia coli
- Deposited: 2008-04-18 Released: 2008-05-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.221
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative phosphoheptose isomerase | A, B, C, D | 243 | Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) | Mutation(s): 0 |
Find proteins for Q9K7N6 (Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Go to UniProtKB: Q9K7N6 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | A, B, C, D | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A, B, C, D | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A, C | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.221
- R-Value Work: 0.174
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M33CVJ Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 57.490 | α = 90.00 |
| b = 83.430 | β = 90.00 |
| c = 183.770 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| XDS | data reduction |
| SHELX | phasing |
| MolProbity | model building |
| PHENIX | refinement |
| MAR345 | data collection |
| autoSHARP | phasing |
Entry History
Deposition Data
- Deposited Date: 2008-04-18
- Released Date: 2008-05-06
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2008-05-06
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2014-11-12
Type: Structure summary - Version 1.3: 2017-10-25
Type: Refinement description
