3CR6

Crystal Structure of the R132K:R111L:A32E Mutant of Cellular Retinoic Acid Binding Protein Type II Complexed with C15-aldehyde (a retinal analog) at 1.22 Angstrom resolution.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.114 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes

Jia, X.Lee, K.S.Vasileiou, C.Borhan, B.Geiger, J.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cellular retinoic acid-binding protein 2
A
137Homo sapiensMutation(s): 3 
Gene Names: CRABP2
Find proteins for P29373 (Homo sapiens)
Go to Gene View: CRABP2
Go to UniProtKB:  P29373
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LSR
Query on LSR

Download SDF File 
Download CCD File 
A
1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene
C15 H24
KUEVAPFABUUVHS-AYCKBHPDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.114 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 34.852α = 90.00
b = 46.347β = 92.53
c = 37.324γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
MOLREPphasing
EMBLdata collection
SHELXLrefinement
SCALEPACKdata scaling
DENZOdata reduction
HKL-2000data scaling
HKL-2000data reduction
SHELXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-04-04 
  • Released Date: 2009-03-17 
  • Deposition Author(s): Jia, X., Geiger, J.H.

Revision History 

  • Version 1.0: 2009-03-17
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2016-12-28
    Type: Structure summary
  • Version 1.3: 2017-10-25
    Type: Refinement description