Crystal structure of predicted hydrolase of haloacid dehalogenase-like superfamily (NP_295428.1) from Deinococcus radiodurans at 1.66 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Hydrolase family protein | A, B | 200 | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) | Mutation(s): 0  |
Find proteins for Q9RTQ1 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)) Go to UniProtKB:  Q9RTQ1 |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | A, B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | ![]() |  Ligand Interaction | |
NA Query on NA | A, B | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
GOL Query on GOL | B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
PG4 Query on PG4 | A | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 74.108 | α = 90.00 |
b = 74.108 | β = 90.00 |
c = 160.923 | γ = 90.00 |
Software Name | Purpose |
---|---|
XDS | data reduction |
PHENIX | refinement |
MAR345 | data collection |
SHELXD | phasing |
autoSHARP | phasing |
REFMAC | refinement |
XSCALE | data scaling |
MolProbity | model building |
PDB_EXTRACT | data extraction |
SHELX | phasing |