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Download EndnoteCrystal structure of predicted hydrolase of haloacid dehalogenase-like superfamily (NP_295428.1) from Deinococcus radiodurans at 1.66 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3CNH
Crystal structure of predicted hydrolase of haloacid dehalogenase-like superfamily (NP_295428.1) from Deinococcus radiodurans at 1.66 A resolution
- DOI: 10.2210/pdb3CNH/pdb
- Classification: HYDROLASE
- Organism(s): Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
- Expression System: Escherichia coli
- Deposited: 2008-03-25 Released: 2008-04-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.187
- R-Value Work: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Hydrolase family protein | A, B | 200 | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) | Mutation(s): 0 |
Find proteins for Q9RTQ1 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)) Go to UniProtKB: Q9RTQ1 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A, B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| NA Query on NA | A, B | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| PG4 Query on PG4 | A | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.187
- R-Value Work: 0.160
- Space Group: P 41 21 2
- Diffraction Data DOI:
10.18430/M33CNH Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 74.108 | α = 90.00 |
| b = 74.108 | β = 90.00 |
| c = 160.923 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| REFMAC | refinement |
| MAR345 | data collection |
| XDS | data reduction |
| SHELXD | phasing |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| MolProbity | model building |
| autoSHARP | phasing |
| XSCALE | data scaling |
Entry History
Deposition Data
- Deposited Date: 2008-03-25
- Released Date: 2008-04-08
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2008-04-08
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2017-10-25
Type: Refinement description
