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Download EndnoteCrystal structure of putative thioesterase (YP_296387.1) from Ralstonia eutropha JMP134 at 1.74 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3CK1
CRYSTAL STRUCTURE OF a putative thioesterase (REUT_A2179) FROM RALSTONIA EUTROPHA JMP134 AT 1.74 A RESOLUTION
- DOI: 10.2210/pdb3CK1/pdb
- Classification: HYDROLASE
- Organism(s): Cupriavidus necator (strain JMP 134 / LMG 1197)
- Expression System: Escherichia coli
- Deposited: 2008-03-14 Released: 2008-03-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.196
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative thioesterase | A, B | 150 | Cupriavidus necator (strain JMP 134 / LMG 1197) | Mutation(s): 0 |
Find proteins for Q46Z90 (Cupriavidus necator (strain JMP 134 / LMG 1197)) Go to UniProtKB: Q46Z90 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.196
- R-Value Work: 0.174
- Space Group: P 61 2 2
- Diffraction Data DOI:
10.18430/M33CK1 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 77.067 | α = 90.00 |
| b = 77.067 | β = 90.00 |
| c = 242.859 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALA | data scaling |
| MolProbity | model building |
| MOSFLM | data reduction |
| REFMAC | refinement |
| SHELXD | phasing |
| PDB_EXTRACT | data extraction |
| autoSHARP | phasing |
| SHELX | phasing |
| MAR345 | data collection |
Entry History
Deposition Data
- Deposited Date: 2008-03-14
- Released Date: 2008-03-25
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2008-03-25
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
