3C6W

Crystal structure of the ING5 PHD finger in complex with H3K4me3 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide.

Champagne, K.S.Saksouk, N.Pena, P.V.Johnson, K.Ullah, M.Yang, X.J.Cote, J.Kutateladze, T.G.

(2008) Proteins 72: 1371-1376


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inhibitor of growth protein 5
A, C
59Homo sapiensMutation(s): 0 
Gene Names: ING5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WYH8 (Homo sapiens)
Explore Q8WYH8 
Go to UniProtKB:  Q8WYH8
GTEx:  ENSG00000168395 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WYH8
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
H3K4me3 histone peptide
B, D
12N/AMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.186 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.14α = 90
b = 68.14β = 90
c = 28.25γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
SOLVEphasing
CNSrefinement
d*TREKdata reduction
d*TREKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-06-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description