3C6W

Crystal structure of the ING5 PHD finger in complex with H3K4me3 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide.

Champagne, K.S.Saksouk, N.Pena, P.V.Johnson, K.Ullah, M.Yang, X.J.Cote, J.Kutateladze, T.G.

(2008) Proteins 72: 1371-1376


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Inhibitor of growth protein 5
A, C
59Homo sapiensGene Names: ING5
Find proteins for Q8WYH8 (Homo sapiens)
Go to Gene View: ING5
Go to UniProtKB:  Q8WYH8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
H3K4me3 histone peptide
B, D
12N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, C
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
M3L
Query on M3L
B, D
L-PEPTIDE LINKINGC9 H21 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.186 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 68.140α = 90.00
b = 68.140β = 90.00
c = 28.250γ = 90.00
Software Package:
Software NamePurpose
Blu-Icedata collection
SOLVEphasing
d*TREKdata reduction
d*TREKdata scaling
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-06-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description