3C4R | pdb_00003c4r

Crystal structure of an uncharacterized protein encoded by cryptic prophage

PDB DOI: https://doi.org/10.2210/pdb3C4R/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli O6
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2008-01-30 Released: 2008-02-19
Deposition Author(s): Sugadev, R., Burley, S.K., Swaminathan, S., Ozyurt, S., Luz, J., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.282 (Depositor), 0.280 (DCC)
R-Value Work:
0.242 (Depositor), 0.241 (DCC)
R-Value Observed:
0.242 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3C4R

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of an uncharacterized protein encoded by cryptic prophage.

Sugadev, R., Burley, S.K., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 70.14 kDa
Atom Count: 4,119
Modeled Residue Count: 502
Deposited Residue Count: 604
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C, D	151	Escherichia coli O6	Mutation(s): 0 Gene Names: c1411
UniProt
Find proteins for A0A0H2V6G8 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)) Explore A0A0H2V6G8 Go to UniProtKB: A0A0H2V6G8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H2V6G8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.282 (Depositor), 0.280 (DCC)
R-Value Work: 0.242 (Depositor), 0.241 (DCC)
R-Value Observed: 0.242 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.826	α = 90
b = 106.57	β = 96.42
c = 88.251	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
CBASS	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELXD	phasing
SHARP	phasing
ARP/wARP	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-02-19

Deposition Author(s):

Swaminathan, S.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2008-02-19
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.