3BQX | pdb_00003bqx

High resolution crystal structure of a glyoxalase-related enzyme from Fulvimarina pelagi

• PDB DOI: https://doi.org/10.2210/pdb3BQX/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Fulvimarina pelagi HTCC2506
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-12-20 Released: 2008-01-08 
• Deposition Author(s): Rao, K.N., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 
  0.248 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.238 (Depositor) 

Literature

High resolution crystal structure of a glyoxalase-related enzyme from Fulvimarina pelagi.

Rao, K.N., Burley, S.K., Swaminathan, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 16.43 kDa 
• Atom Count: 1,210 
• Modeled Residue Count: 139 
• Deposited Residue Count: 150 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxalase-related enzyme	A	150	Fulvimarina pelagi HTCC2506	Mutation(s): 0  Gene Names: FP2506_05986
UniProt
Find proteins for Q0G7J9 (Fulvimarina pelagi HTCC2506) Explore Q0G7J9  Go to UniProtKB:  Q0G7J9

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free:  0.248 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.238 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.93	α = 90
b = 69.75	β = 90
c = 83.07	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MAR345	data collection
MOSFLM	data reduction
SCALA	data scaling
SHELX	phasing
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-01-08 
Deposition Author(s): Rao, K.N., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2008-01-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2021-02-03
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2024-10-30
  Changes: Data collection, Database references, Structure summary