3BFC

class A beta-lactamase SED-G238C complexed with imipenem


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Acyl-intermediate structures of the class A beta-lactamase SED-G238C

Pernot, L.Petrella, S.Sougakoff, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Class A beta-lactamase Sed1
A, B, C, D
262Citrobacter sedlakiiMutation(s): 1 
EC: 3.5.2.6
Find proteins for Q93PQ0 (Citrobacter sedlakii)
Go to UniProtKB:  Q93PQ0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IM2
Query on IM2

Download SDF File 
Download CCD File 
A, B, C, D
(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid
IMIPENEM, open form; N-FORMIMIDOYL-THIENAMYCINE, open form
C12 H19 N3 O4 S
UACUABDJLSUFFC-IWSPIJDZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.206 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 188.436α = 90.00
b = 73.399β = 122.36
c = 105.050γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
SCALAdata scaling
CNSrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-12-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2011-08-24
    Type: Non-polymer description