3BE4

Crystal structure of Cryptosporidium parvum adenylate kinase cgd5_3360


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of Cryptosporidium parvum adenylate kinase cgd5_3360.

Wernimont, A.K.Lew, J.Kozieradzki, I.Lin, Y.H.Sun, X.Khuu, C.Zhao, Y.Schapira, M.Arrowsmith, C.H.Edwards, A.M.Weigelt, J.Bochkarev, A.Hui, R.Artz, J.D.Amani, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Adenylate kinase
A
217Cryptosporidium parvum (strain Iowa II)Mutation(s): 0 
Find proteins for Q5CRC5 (Cryptosporidium parvum (strain Iowa II))
Go to UniProtKB:  Q5CRC5
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
AP5
Query on AP5

Download SDF File 
Download CCD File 
A
BIS(ADENOSINE)-5'-PENTAPHOSPHATE
C20 H29 N10 O22 P5
OIMACDRJUANHTJ-XPWFQUROSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.162 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 101.175α = 90.00
b = 101.175β = 90.00
c = 72.433γ = 120.00
Software Package:
Software NamePurpose
ADSCdata collection
DENZOdata reduction
PHASERphasing
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-12-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Advisory, Refinement description