3BCX

E1 Dehydrase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

E1 Dehydrase.

Smith, P.Szu, P.-H.Tsai, S.-C.Liu, H.-W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase
A, B
437Yersinia pseudotuberculosisMutation(s): 0 
Gene Names: ddhC (btrR, rfbH)
EC: 2.6.1.-
Find proteins for Q57323 (Yersinia pseudotuberculosis)
Go to UniProtKB:  Q57323
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FE
Query on FE

Download SDF File 
Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
BEN
Query on BEN

Download SDF File 
Download CCD File 
A, B
BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.208 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 97.313α = 90.00
b = 97.313β = 90.00
c = 142.347γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data collection
DENZOdata reduction
PDB_EXTRACTdata extraction
CNSphasing
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2007-11-13 
  • Released Date: 2007-11-27 
  • Deposition Author(s): Tsai, S.-C., Smith, P.

Revision History 

  • Version 1.0: 2007-11-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description
  • Version 1.3: 2018-01-24
    Type: Database references, Structure summary