3B7Y

Crystal structure of the C2 Domain of the E3 Ubiquitin-Protein Ligase NEDD4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

C2 Domain of the Human E3 Ubiquitin-Protein Ligase NEDD4.

Walker, J.R.Ruzanov, M.Butler-Cole, C.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Bochkarev, A.Dhe-Paganon, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase NEDD4AB153Homo sapiensMutation(s): 0 
Gene Names: NEDD4KIAA0093NEDD4-1PIG53
EC: 6.3.2 (PDB Primary Data), 2.3.2.26 (UniProt)
Find proteins for P46934 (Homo sapiens)
Explore P46934 
Go to UniProtKB:  P46934
NIH Common Fund Data Resources
PHAROS  P46934
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.778α = 108.89
b = 47.997β = 111.11
c = 50.786γ = 100.86
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-11-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance