3B7H | pdb_00003b7h

Crystal structure of the prophage Lp1 protein 11

PDB DOI: https://doi.org/10.2210/pdb3B7H/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Lactiplantibacillus plantarum WCFS1
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2007-10-30 Released: 2007-12-04
Deposition Author(s): Zhang, R., Zhou, M., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.249 (Depositor), 0.284 (DCC)
R-Value Work:
0.196 (Depositor), 0.223 (DCC)
R-Value Observed:
0.198 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the prophage Lp1 protein 11.

Zhang, R., Zhou, M., Keigher, L., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 8.8 kDa
Atom Count: 657
Modeled Residue Count: 76
Deposited Residue Count: 78
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Prophage Lp1 protein 11	A	78	Lactiplantibacillus plantarum WCFS1	Mutation(s): 0 Gene Names: lp_0634
UniProt
Find proteins for F9UL97 (Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)) Explore F9UL97 Go to UniProtKB: F9UL97
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F9UL97
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.249 (Depositor), 0.284 (DCC)
R-Value Work: 0.196 (Depositor), 0.223 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.951	α = 90
b = 65.65	β = 90
c = 27.121	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
MLPHARE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-12-04

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-12-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.