3AWU

Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 40 h

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.138 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein

Matoba, Y., Bando, N., Oda, K., Noda, M., Higashikawa, F., Kumagai, T., Sugiyama, M.

(2011) J.Biol.Chem. 286: 30219-30231

  • DOI: 10.1074/jbc.M111.256818
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • The Cu(II)-soaked crystal structure of tyrosinase that is present in a complex with a protein, designated "caddie," which we previously determined, possesses two copper ions at its catalytic center. We had identified two copper-binding sites in the c ...

    The Cu(II)-soaked crystal structure of tyrosinase that is present in a complex with a protein, designated "caddie," which we previously determined, possesses two copper ions at its catalytic center. We had identified two copper-binding sites in the caddie protein and speculated that copper bound to caddie may be transported to the tyrosinase catalytic center. In our present study, at a 1.16-1.58 Å resolution, we determined the crystal structures of tyrosinase complexed with caddie prepared by altering the soaking time of the copper ion and the structures of tyrosinase complexed with different caddie mutants that display little or no capacity to activate tyrosinase. Based on these structures, we propose a molecular mechanism by which two copper ions are transported to the tyrosinase catalytic center with the assistance of caddie acting as a metallochaperone.

    Related Citations: 
    • Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis
      Matoba, Y.,Kumagai, T.,Yamamoto, A.,Yoshitsu, H.,Sugiyama, M.
      (2006) J.Biol.Chem. 281: 8981

    Organizational Affiliation: 

    Department of Molecular Microbiology and Biotechnology, Graduate School of Biomedical Sciences, Hiroshima University, Minami-ku, Hiroshima, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosinase
A
281Streptomyces castaneoglobisporusMutation(s): 0 
Find proteins for Q83WS2 (Streptomyces castaneoglobisporus)
Go to UniProtKB:  Q83WS2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
MelC
B
134Streptomyces castaneoglobisporusMutation(s): 0 
Find proteins for Q83WS1 (Streptomyces castaneoglobisporus)
Go to UniProtKB:  Q83WS1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CU
Query on CU
Download SDF File 
Download CCD File 
A, B
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
NO3
Query on NO3
Download SDF File 
Download CCD File 
A, B
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.138 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 65.100α = 90.00
b = 97.790β = 90.00
c = 54.990γ = 90.00
Software Package:
Software NamePurpose
CNSphasing
HKL-2000data scaling
BSSdata collection
SHELXL-97refinement
CNSrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2011-08-31
    Type: Database references