3AW9

Structure of UDP-galactose 4-epimerase mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of UDP-galactose 4-epimerase mutant

Sakuraba, H.Kawai, T.Yoneda, K.Ohshima, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NAD-dependent epimerase/dehydratase
A, B, C
308Pyrobaculum calidifontis (strain JCM 11548 / VA1)Mutation(s): 0 
Find proteins for A3MUJ4 (Pyrobaculum calidifontis (strain JCM 11548 / VA1))
Go to UniProtKB:  A3MUJ4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDU
Query on GDU

Download SDF File 
Download CCD File 
A, B, C
GALACTOSE-URIDINE-5'-DIPHOSPHATE
UDP-D-GALACTOPYRANOSE
C15 H24 N2 O17 P2
HSCJRCZFDFQWRP-ABVWGUQPSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A, B, C
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.204 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 88.623α = 90.00
b = 113.644β = 90.00
c = 217.267γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
MOLREPphasing
DMphasing
SCALEPACKdata scaling
HKL-2000data collection
REFMACrefinement
DENZOdata reduction
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-02-29
    Type: Initial release
  • Version 1.1: 2014-06-18
    Type: Database references
  • Version 1.2: 2017-10-11
    Type: Refinement description