3AM7

Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide

Tomoo, K.Fukuyo, A.In, Y.Ishida, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Eukaryotic translation initiation factor 4E
A
191Homo sapiensMutation(s): 0 
Gene Names: EIF4E (EIF4EL1, EIF4F)
Find proteins for P06730 (Homo sapiens)
Go to Gene View: EIF4E
Go to UniProtKB:  P06730
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Eukaryotic translation initiation factor 4E-binding protein 2
B
19Homo sapiensMutation(s): 0 
Gene Names: EIF4EBP2
Find proteins for Q13542 (Homo sapiens)
Go to Gene View: EIF4EBP2
Go to UniProtKB:  Q13542
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MGP
Query on MGP

Download SDF File 
Download CCD File 
A
7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
C11 H19 N5 O14 P3
DKVRNHPCAOHRSI-KQYNXXCUSA-O
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
MGPIC50: 2360 - 5720 nM (99) BINDINGDB
MGPKd: 10 nM (99) BINDINGDB
MGPKi: 28 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.230 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 87.840α = 90.00
b = 87.840β = 90.00
c = 37.750γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
CrystalCleardata collection
CNSrefinement
CrystalCleardata reduction
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-08-17
    Type: Initial release