3AH9 | pdb_00003ah9

Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution

PDB DOI: https://doi.org/10.2210/pdb3AH9/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Saimiriine herpesvirus 2
Mutation(s): No

Deposited: 2010-04-22 Released: 2011-04-06
Deposition Author(s): Okuyama, K., Morimoto, T., Hongo, C., Hosaka, N., Nishino, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.08 Å
R-Value Free:
0.191 (Depositor), 0.176 (DCC)
R-Value Work:
0.165 (Depositor), 0.167 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of (Pro-Pro-Gly)9

Okuyama, K., Morimoto, T., Hongo, C., Hosaka, N., Nishino, N.

To be published.

Macromolecule Content

Total Structure Weight: 13.97 kDa
Atom Count: 1,149
Modeled Residue Count: 145
Deposited Residue Count: 162
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
collagen-like peptide	A, B, C, D, E A, B, C, D, E, F	27	N/A	Mutation(s): 0
UniProt
Find proteins for Q80BK4 (Saimiriine herpesvirus 2) Explore Q80BK4 Go to UniProtKB: Q80BK4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q80BK4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACY Query on ACY Download:Ideal Coordinates CCD File SDF format, chain K [auth E] SDF format, chain L [auth E] MOL2 format, chain K [auth E] MOL2 format, chain L [auth E] mmCIF format, chain K [auth E] mmCIF format, chain L [auth E]	K [auth E], L [auth E]	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Interactions Focus chain K [auth E] Focus chain L [auth E] Interactions & Density Focus chain K [auth E] Focus chain L [auth E]
AZI Query on AZI Download:Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain H [auth C] SDF format, chain I [auth D] SDF format, chain J [auth E] MOL2 format, chain G [auth B] MOL2 format, chain H [auth C] MOL2 format, chain I [auth D] MOL2 format, chain J [auth E] mmCIF format, chain G [auth B] mmCIF format, chain H [auth C] mmCIF format, chain I [auth D] mmCIF format, chain J [auth E]	G [auth B], H [auth C], I [auth D], J [auth E]	AZIDE ION N₃ IVRMZWNICZWHMI-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Focus chain H [auth C] Focus chain I [auth D] Focus chain J [auth E] Interactions & Density Focus chain G [auth B] Focus chain H [auth C] Focus chain I [auth D] Focus chain J [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.08 Å
R-Value Free: 0.191 (Depositor), 0.176 (DCC)
R-Value Work: 0.165 (Depositor), 0.167 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 26.416	α = 90
b = 25.99	β = 90.03
c = 80.241	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
SHELXL-97	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-04-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-04-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description

3AH9 | pdb_00003ah9

Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution

Literature

Crystal structure of (Pro-Pro-Gly)9

Biological Assembly 1

Biological Assembly 2

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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