Download MendeleyCrystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004
Iwasaki, T., Kappl, R., Bracic, G., Shimizu, N., Ohmori, D., Kumasaka, T.To be published.
3AH7
Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004
- PDB DOI: https://doi.org/10.2210/pdb3AH7/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Pseudomonas putida
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-04-20 Released: 2011-04-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.182
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| [2Fe-2S]ferredoxin | 113 | Pseudomonas putida | Mutation(s): 0 Gene Names: fdxB, fdx, E4195_05985, JEU22_22730 |  | |
UniProt | |||||
Find proteins for Q76CS9 (Pseudomonas putida) Explore Q76CS9 Go to UniProtKB: Q76CS9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q76CS9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FES Query on FES | B [auth A] | FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.182
- R-Value Observed: 0.183
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 87.575 | α = 90 |
| b = 87.575 | β = 90 |
| c = 73.139 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BSS | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-04-20 Deposition Author(s): Kumasaka, T., Shimizu, N., Ohmori, D., Iwasaki, T.
Revision History (Full details and data files)
- Version 1.0: 2011-04-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
