3AGR | pdb_00003agr

Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum

PDB DOI: https://doi.org/10.2210/pdb3AGR/pdb

Classification: HYDROLASE
Organism(s): Neospora caninum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-04-06 Released: 2011-04-06
Deposition Author(s): Matoba, K., Shiba, T., Seiki, M., Asai, T., Harada, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.265 (Depositor), 0.257 (DCC)
R-Value Work:
0.228 (Depositor), 0.220 (DCC)
R-Value Observed:
0.230 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3AGR

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum

Matoba, K., Shiba, T., Takeuchi, T., Sibley, L.D., Asai, T., Harada, S.

To be published.

Macromolecule Content

Total Structure Weight: 132.85 kDa
Atom Count: 9,179
Modeled Residue Count: 1,182
Deposited Residue Count: 1,204
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoside triphosphate hydrolase	A, B	602	Neospora caninum	Mutation(s): 0 EC: 3.6.1.15
UniProt
Find proteins for C9K7J7 (Neospora caninum) Explore C9K7J7 Go to UniProtKB: C9K7J7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C9K7J7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.265 (Depositor), 0.257 (DCC)
R-Value Work: 0.228 (Depositor), 0.220 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.664	α = 90
b = 140.776	β = 90
c = 301.067	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-04-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-04-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2013-12-25
Changes: Structure summary
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-11-13
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.