2WEF

Human 3'(2'), 5'-bisphosphate nucleotidase 1 (BPNT1) in complex with AMP, PO4 and Magnesium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.144 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3'(2')\, 5'-BISPHOSPHATE NUCLEOTIDASE 1
A
311Homo sapiensMutation(s): 0 
Gene Names: BPNT1
EC: 3.1.3.7
Find proteins for O95861 (Homo sapiens)
Go to Gene View: BPNT1
Go to UniProtKB:  O95861
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
AMP
Query on AMP

Download SDF File 
Download CCD File 
A
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.144 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.980α = 90.00
b = 67.664β = 90.00
c = 100.394γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
XDSdata reduction
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-04-14
    Type: Initial release
  • Version 1.1: 2015-04-29
    Type: Derived calculations, Other, Structure summary, Version format compliance