2VSG

A Structural Motif in the Variant Surface Glycoproteins of Trypanosoma Brucei


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

A structural motif in the variant surface glycoproteins of Trypanosoma brucei.

Blum, M.L.Down, J.A.Gurnett, A.M.Carrington, M.Turner, M.J.Wiley, D.C.

(1993) Nature 362: 603-609

  • DOI: https://doi.org/10.1038/362603a0
  • Primary Citation of Related Structures:  
    2VSG

  • PubMed Abstract: 

    The variable domain of the trypanosome variant surface glycoprotein (VSG) ILTat 1.24 has been shown by X-ray crystallography to resemble closely the structures of VSG MITat 1.2, despite their low sequence similarity. Specific structural features of these VSGs, including substitution of carbohydrate for an alpha-helix, can be found in other VSG sequences. Thus antigenic variation in trypanosomes is accomplished by sequence variation, not gross structural alteration; the extensive sequence differences among VSGs may be required for another reason, such as the avoidance of recognition by helper T cells. Additionally, VSG sequences are found to define families, within a VSG superfamily, which have evolved in the trypanosome genome.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, Harvard University, Cambridge, Massachusetts.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VARIANT SURFACE GLYCOPROTEIN ILTAT 1.24
A, B
358Trypanosoma bruceiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P26329 (Trypanosoma brucei brucei)
Explore P26329 
Go to UniProtKB:  P26329
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26329
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.1α = 90
b = 98.8β = 90
c = 172.9γ = 90
Software Package:
Software NamePurpose
BUDDHAdata collection
ROTAVATAdata reduction
Agrovatadata reduction
BRICOGNEmodel building
X-PLORrefinement
BUDDHAdata reduction
CCP4data scaling
ROTAVATAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-11-25
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description
  • Version 1.4: 2023-12-27
    Changes: Data collection, Database references
  • Version 1.5: 2024-10-16
    Changes: Structure summary