2V1Q | pdb_00002v1q

Atomic-resolution structure of the yeast Sla1 SH3 domain 3

• PDB DOI: https://doi.org/10.2210/pdb2V1Q/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2007-05-29 Released: 2008-06-03 
• Deposition Author(s): Kursula, I., Kursula, P., Zou, P., Lehmann, F., Song, Y.H., Wilmanns, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free: 
  0.188 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.148 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.151 (Depositor) 

Starting Model: experimental

Literature

Structural Genomics of Yeast SH3 Domains

Kursula, P., Kursula, I., Pinotsis, N., Lehmann, F., Zou, P., Song, Y.H., Wilmanns, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 14.12 kDa 
• Atom Count: 1,180 
• Modeled Residue Count: 118 
• Deposited Residue Count: 120 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CYTOSKELETON ASSEMBLY CONTROL PROTEIN SLA1	A, B	60	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P32790 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32790  Go to UniProtKB:  P32790

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PT	D [auth A], E [auth B]	PLATINUM (II) ION Pt HRGDZIGMBDGFTC-UHFFFAOYSA-N
CL	F [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	C [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free:  0.188 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.148 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.151 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.94	α = 90
b = 55.25	β = 90
c = 85.29	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-06-03 
Deposition Author(s): Kursula, I., Kursula, P., Zou, P., Lehmann, F., Song, Y.H., Wilmanns, M.

Revision History  

• Version 1.0: 2008-06-03
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-07-24
  Changes: Data collection
• Version 1.4: 2023-12-13
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description