2UYL

Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1

• PDB DOI: https://doi.org/10.2210/pdb2UYL/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2007-04-10 Released: 2008-05-13 
• Deposition Author(s): Ahmed, F., Haouz, A., Nato, F., Fournier, J.M., Alzari, P.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.257 
• R-Value Work: 0.211 
• R-Value Observed: 0.213 

Starting Model: other

Literature

Crystal Structure of a Monoclonal Antibody Directed Against an Antigenic Determinant Common to Ogawa and Inaba Serotypes of Vibrio Cholerae O1.

Ahmed, F., Andre-Leroux, G., Haouz, A., Boutonnier, A., Delepierre, M., Qadri, F., Nato, F., Fournier, J.M., Alzari, P.M.

(2008) Proteins 70: 284

• PubMed: 17876834 
• DOI: https://doi.org/10.1002/prot.21609
• Primary Citation of Related Structures:  
  2UYL

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Organizational Affiliation: 

Institut Pasteur and CNRS URA 2185, 25/28 rue du Dr. Roux, Paris, France.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 4 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 190.66 kDa 
• Atom Count: 13,057 
• Modelled Residue Count: 1,718 
• Deposited Residue Count: 1,760 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	A, C [auth M], E [auth V], G [auth X]	219	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	B, D [auth N], F [auth W], H [auth Y]	221	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.257 
• R-Value Work: 0.211 
• R-Value Observed: 0.213 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.06	α = 111.05
b = 75.225	β = 90.39
c = 98.409	γ = 106.83

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-05-13 
Deposition Author(s): Ahmed, F., Haouz, A., Nato, F., Fournier, J.M., Alzari, P.M.

Revision History  

• Version 1.0: 2008-05-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2012-06-06
  Changes: Other
• Version 1.3: 2024-05-01
  Changes: Data collection, Database references, Other, Refinement description