2UYL | pdb_00002uyl

Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1

PDB DOI: https://doi.org/10.2210/pdb2UYL/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2007-04-10 Released: 2008-05-13
Deposition Author(s): Ahmed, F., Haouz, A., Nato, F., Fournier, J.M., Alzari, P.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.257 (Depositor)
R-Value Work:
0.211 (Depositor), 0.213 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: other
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This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of a Monoclonal Antibody Directed Against an Antigenic Determinant Common to Ogawa and Inaba Serotypes of Vibrio Cholerae O1.

Ahmed, F., Andre-Leroux, G., Haouz, A., Boutonnier, A., Delepierre, M., Qadri, F., Nato, F., Fournier, J.M., Alzari, P.M.

(2008) Proteins 70: 284

PubMed: 17876834 Search on PubMed
DOI: https://doi.org/10.1002/prot.21609
Primary Citation Related Structures:
2UYL

Organizational Affiliation

Institut Pasteur and CNRS URA 2185, 25/28 rue du Dr. Roux, Paris, France.

Macromolecule Content

Total Structure Weight: 190.66 kDa
Atom Count: 13,057
Modeled Residue Count: 1,718
Deposited Residue Count: 1,760
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	A, C [auth M], E [auth V], G [auth X]	219	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P01837 (Mus musculus) Explore P01837 Go to UniProtKB: P01837
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01837
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	B, D [auth N], F [auth W], H [auth Y]	221	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257 (Depositor)
R-Value Work: 0.211 (Depositor), 0.213 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.06	α = 111.05
b = 75.225	β = 90.39
c = 98.409	γ = 106.83

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-05-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-05-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2012-06-06
Changes: Other
Version 1.3: 2024-05-01
Changes: Data collection, Database references, Other, Refinement description
Version 1.4: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.