2UXW

Crystal structure of human very long chain acyl-CoA dehydrogenase (ACADVL)

• PDB DOI: https://doi.org/10.2210/pdb2UXW/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-03-30 Released: 2007-05-01 
• Deposition Author(s): Pike, A.C.W., Hozjan, V., Smee, C., Berridge, G., Burgess, N., Salah, E., Bunkoczi, G., Uppenberg, J., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A., Weigelt, J., Sundstrom, M., Oppermann, U.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.170 
• R-Value Work: 0.148 
• R-Value Observed: 0.149 

Starting Model: experimental

Literature

Crystal Structure of Human Very Long Chain Acyl- Coa Dehydrogenase (Acadvl)

Pike, A.C.W., Hozjan, V., Smee, C., Berridge, G., Burgess, N., Salah, E., Bunkoczi, G., Uppenberg, J., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A., Weigelt, J., Sundstrom, M., Oppermann, U.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 67.72 kDa 
• Atom Count: 4,966 
• Modelled Residue Count: 567 
• Deposited Residue Count: 607 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VERY-LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE	A	607	Homo sapiens	Mutation(s): 0  EC: 1.3.99 (PDB Primary Data), 1.3.8.9 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P49748 (Homo sapiens) Explore P49748  Go to UniProtKB:  P49748
PHAROS:  P49748 GTEx:  ENSG00000072778

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TH3	E [auth A]	TRANS DELTA2 PALMITENOYL-COENZYMEA C37 H64 N7 O17 P3 S JUPAQFRKPHPXLD-WUKNDPDISA-N
FAD	D [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
EDO	B [auth A], C [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.170 
• R-Value Work: 0.148 
• R-Value Observed: 0.149 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.001	α = 90
b = 108.173	β = 90
c = 149.731	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-01 
Deposition Author(s): Pike, A.C.W., Hozjan, V., Smee, C., Berridge, G., Burgess, N., Salah, E., Bunkoczi, G., Uppenberg, J., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A., Weigelt, J., Sundstrom, M., Oppermann, U.

Revision History  

• Version 1.0: 2007-05-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description