2RUG

Refined solution structure of the first RNA recognition motif domain in CPEB3


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3.

Tsuda, K.Kuwasako, K.Nagata, T.Takahashi, M.Kigawa, T.Kobayashi, N.Guntert, P.Shirouzu, M.Yokoyama, S.Muto, Y.

(2014) Proteins 82: 2879-2886

  • DOI: https://doi.org/10.1002/prot.24651
  • Primary Citation of Related Structures:  
    2RUG

  • PubMed Abstract: 

    The family of cytoplasmic polyadenylation element binding proteins CPEB1, CPEB2, CPEB3, and CPEB4 binds to the 3'-untranslated region (3'-UTR) of mRNA, and plays significant roles in mRNA metabolism and translation regulation. They have a common domain organization, involving two consecutive RNA recognition motif (RRM) domains followed by a zinc finger domain in the C-terminal region. We solved the solution structure of the first RRM domain (RRM1) of human CPEB3, which revealed that CPEB3 RRM1 exhibits structural features distinct from those of the canonical RRM domain. Our structural data provide important information about the RNA binding ability of CPEB3 RRM1.


  • Organizational Affiliation

    RIKEN Systems and Structural Biology Center, Tsurumi-ku, Yokohama, 230-0045, Japan; Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Tsurumi-ku, Yokohama, 230-0045, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic polyadenylation element-binding protein 3114Homo sapiensMutation(s): 0 
Gene Names: CPEB3KIAA0940
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NE35 (Homo sapiens)
Explore Q8NE35 
Go to UniProtKB:  Q8NE35
PHAROS:  Q8NE35
GTEx:  ENSG00000107864 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NE35
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2014-09-17
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Data collection, Database references
  • Version 1.2: 2023-06-14
    Changes: Other