2RDX

Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM.

Patskovsky, Y.Bonanno, J.B.Sauder, J.M.Gilmore, M.Ozyurt, S.Lau, C.Maletic, M.Gheyi, T.Wasserman, S.R.Koss, J.Gerlt, J.A.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mandelate racemase/muconate lactonizing enzyme, putative
A, B, C, D, E, F, G, H
379Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM)Mutation(s): 0 
Find proteins for A3SNF8 (Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM))
Go to UniProtKB:  A3SNF8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, C, D, F, G, H
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.194 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 169.415α = 90.00
b = 169.219β = 90.00
c = 223.476γ = 90.00
Software Package:
Software NamePurpose
MAR345data collection
SHELXphasing
HKL-2000data scaling
REFMACrefinement
HKL-2000data reduction
SHELXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-10-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description
  • Version 1.3: 2018-11-14
    Type: Data collection, Structure summary