2R0J | pdb_00002r0j

Crystal structure of the putative ubiquitin conjugating enzyme, PFE1350c, from Plasmodium falciparum

PDB DOI: https://doi.org/10.2210/pdb2R0J/pdb

Classification: LIGASE
Organism(s): Plasmodium falciparum 3D7
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-08-20 Released: 2007-09-04
Deposition Author(s): Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Kozieradzki, I., Zhao, Y., Schapira, M., Bochkarev, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Brokx, S., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.231 (Depositor), 0.229 (DCC)
R-Value Work:
0.193 (Depositor), 0.191 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the putative ubiquitin conjugating enzyme, PFE1350c, from Plasmodium falciparum.

Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Kozieradzki, I., Zhao, Y., Schapira, M., Bochkarev, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Brokx, S.

To be published.

Macromolecule Content

Total Structure Weight: 17.06 kDa
Atom Count: 1,354
Modeled Residue Count: 147
Deposited Residue Count: 149
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carrier protein	A	149	Plasmodium falciparum 3D7	Mutation(s): 0 Gene Names: PFE1350c EC: 6.3.2 (PDB Primary Data), 6.3.2.19 (UniProt)
UniProt
Find proteins for Q8I3J4 (Plasmodium falciparum (isolate 3D7)) Explore Q8I3J4 Go to UniProtKB: Q8I3J4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8I3J4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.231 (Depositor), 0.229 (DCC)
R-Value Work: 0.193 (Depositor), 0.191 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.747	α = 90
b = 73.747	β = 90
c = 79.112	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-09-04

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2007-09-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description