2R0J

Crystal structure of the putative ubiquitin conjugating enzyme, PFE1350c, from Plasmodium falciparum

• PDB DOI: https://doi.org/10.2210/pdb2R0J/pdb

• Classification: LIGASE
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-08-20 Released: 2007-09-04 
• Deposition Author(s): Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Kozieradzki, I., Zhao, Y., Schapira, M., Bochkarev, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Brokx, S., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.231 
• R-Value Work: 0.193 
• R-Value Observed: 0.195 

Literature

Crystal structure of the putative ubiquitin conjugating enzyme, PFE1350c, from Plasmodium falciparum.

Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Kozieradzki, I., Zhao, Y., Schapira, M., Bochkarev, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Brokx, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 17.06 kDa 
• Atom Count: 1,354 
• Modelled Residue Count: 147 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carrier protein	A	149	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PFE1350c EC: 6.3.2
UniProt
Find proteins for Q8I3J4 (Plasmodium falciparum (isolate 3D7)) Explore Q8I3J4  Go to UniProtKB:  Q8I3J4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.231 
• R-Value Work: 0.193 
• R-Value Observed: 0.195 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.747	α = 90
b = 73.747	β = 90
c = 79.112	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-09-04 
Deposition Author(s): Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Kozieradzki, I., Zhao, Y., Schapira, M., Bochkarev, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Brokx, S., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-09-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Refinement description