2QHT | pdb_00002qht

Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B

PDB DOI: https://doi.org/10.2210/pdb2QHT/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-07-02 Released: 2008-02-26
Deposition Author(s): Kim, D.J., Lee, S.J., Kim, H.S., Kim, K.H., Lee, H.H., Yoon, H.J., Suh, S.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.222 (Depositor), 0.221 (DCC)
R-Value Work:
0.199 (Depositor), 0.197 (DCC)
R-Value Observed:
0.201 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2QHT

This is version 1.3 of the entry. See complete history.

Literature

Structural basis of octanoic acid recognition by lipoate-protein ligase B

Kim, D.J., Lee, S.J., Kim, H.S., Kim, K.H., Lee, H.H., Yoon, H.J., Suh, S.W.

(2008) Proteins 70: 1620-1625

PubMed: 18076036 Search on PubMed
DOI: https://doi.org/10.1002/prot.21843
Primary Citation Related Structures:
2QHS, 2QHT, 2QHU, 2QHV

Organizational Affiliation

Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 151-742, Korea.

Macromolecule Content

Total Structure Weight: 23.24 kDa
Atom Count: 1,946
Modeled Residue Count: 210
Deposited Residue Count: 210
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipoyltransferase	A	210	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: TTC 1746 EC: 2.3.1 (PDB Primary Data), 2.3.1.181 (UniProt)
UniProt
Find proteins for Q5SLQ3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLQ3 Go to UniProtKB: Q5SLQ3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SLQ3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.222 (Depositor), 0.221 (DCC)
R-Value Work: 0.199 (Depositor), 0.197 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.609	α = 90
b = 63.609	β = 90
c = 113.869	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-02-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-02-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2017-10-18
Changes: Refinement description
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.