2Q4W

Ensemble refinement of the protein crystal structure of cytokinin oxidase/dehydrogenase (CKX) from Arabidopsis thaliana At5g21482


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.143 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 

  • 2EXR - determined by Wesenberg, G.E., Phillips Jr., G.N., Han, B.W., Bitto, E., Bingman, C.A., Bae, E., Center for Eukaryotic Structural Genomics (CESG)  

Literature

Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.

Bae, E.Bingman, C.A.Bitto, E.Aceti, D.J.Phillips, G.N.

(2008) Proteins 70: 303-306


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytokinin dehydrogenase 7
A
524Arabidopsis thalianaMutation(s): 0 
Gene Names: CKX7 (CKX5)
EC: 1.5.99.12
Find proteins for Q9FUJ1 (Arabidopsis thaliana)
Go to UniProtKB:  Q9FUJ1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download SDF File 
Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.143 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 45.858α = 90.00
b = 114.502β = 90.00
c = 190.920γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-06-19
    Type: Initial release
  • Version 1.1: 2007-09-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2011-08-10
    Type: Other