2PW6

Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.236 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12.

Newton, M.G.Takagi, Y.Ebihara, A.Shinkai, A.Kuramitsu, S.Yokayama, S.Li, Y.Chen, L.Zhu, J.Ruble, J.Liu, Z.J.Rose, J.P.Wang, B.-C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized protein ygiDA271Escherichia coli K-12Mutation(s): 12 
Gene Names: ygiDb3039JW3007
EC: 1.13.11.29
UniProt
Find proteins for P24197 (Escherichia coli (strain K12))
Explore P24197 
Go to UniProtKB:  P24197
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A], C [auth A], D [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.236 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.94α = 90
b = 83.94β = 90
c = 85.509γ = 120
Software Package:
Software NamePurpose
SCA2STRUCTUREmodel building
REFMACrefinement
SERGUIdata collection
HKL-2000data reduction
SCALEPACKdata scaling
SCA2STRUCTUREphasing

Structure Validation

View Full Validation Report




Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2007-06-12
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2017-09-13
    Changes: Refinement description
  • Version 1.4: 2018-01-24
    Changes: Database references, Structure summary