Download MendeleyCrystal structure of uncharacterized protein JW3007 from Escherichia coli K12.
Newton, M.G., Takagi, Y., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokayama, S., Li, Y., Chen, L., Zhu, J., Ruble, J., Liu, Z.J., Rose, J.P., Wang, B.-C.To be published.
2PW6
Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12
- PDB DOI: 10.2210/pdb2PW6/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-05-10 Released: 2007-06-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.267
- R-Value Work: 0.235
- R-Value Observed: 0.236
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein ygiD | A | 271 | Escherichia coli K-12 | Mutation(s): 12 Gene Names: ygiD, b3039, JW3007 EC: 1.13.11.29 |  |
UniProt | |||||
Find proteins for P24197 (Escherichia coli (strain K12)) Explore P24197 Go to UniProtKB: P24197 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24197 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A], C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.267
- R-Value Work: 0.235
- R-Value Observed: 0.236
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.94 | α = 90 |
| b = 83.94 | β = 90 |
| c = 85.509 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SCA2STRUCTURE | model building |
| REFMAC | refinement |
| SERGUI | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SCA2STRUCTURE | phasing |
Entry History
Deposition Data
- Released Date: 2007-06-12 Deposition Author(s): Newton, M.G., Takagi, Y., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokayama, S., Li, Y., Chen, L., Zhu, J., Ruble, J., Liu, Z.J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-06-12
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-09-13
Changes: Refinement description - Version 1.4: 2018-01-24
Changes: Database references, Structure summary
