2PW6

Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12.

Newton, M.G.Takagi, Y.Ebihara, A.Shinkai, A.Kuramitsu, S.Yokayama, S.Li, Y.Chen, L.Zhu, J.Ruble, J.Liu, Z.J.Rose, J.P.Wang, B.-C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein ygiD
A
271Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: ygiD
EC: 1.13.11.29
Find proteins for P24197 (Escherichia coli (strain K12))
Go to UniProtKB:  P24197
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.235 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 83.940α = 90.00
b = 83.940β = 90.00
c = 85.509γ = 120.00
Software Package:
Software NamePurpose
SERGUIdata collection
HKL-2000data reduction
SCA2STRUCTUREphasing
SCA2STRUCTUREmodel building
SCALEPACKdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-06-12
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2017-09-13
    Type: Refinement description
  • Version 1.4: 2018-01-24
    Type: Database references, Structure summary