2OM5

N-Terminal Fragment of Human TAX1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.238 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The crystal structure of the ligand-binding module of human TAG-1 suggests a new mode of homophilic interaction

Mortl, M.Sonderegger, P.Diederichs, K.Welte, W.

(2007) Protein Sci 16: 2174-2183

  • DOI: https://doi.org/10.1110/ps.072802707
  • Primary Citation of Related Structures:  
    2OM5

  • PubMed Abstract: 

    Human TAG-1 is a neural cell adhesion molecule that is crucial for the development of the nervous system during embryogenesis. It consists of six immunoglobulin-like and four fibronectin III-like domains and is anchored to the membrane by glycosylphosphatidylinositol. Herein we present the crystal structure of the four N-terminal immunoglobulin-like domains of TAG-1 (TAG-1(Ig1-4)), known to be important in heterophilic and homophilic macromolecular interactions. The contacts of neighboring molecules within the crystal were investigated. A comparison with the structure of the chicken ortholog resulted in an alternative mode for the molecular mechanism of homophilic TAG-1 interaction. This mode of TAG-1 homophilic interaction is based on dimer formation rather than formation of a molecular zipper as proposed for the chicken ortholog.


  • Organizational Affiliation

    University of Konstanz, Department of Biology, Konstanz, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Contactin 2381Homo sapiensMutation(s): 0 
Gene Names: CNTN2TAG1TAX
UniProt & NIH Common Fund Data Resources
Find proteins for Q02246 (Homo sapiens)
Explore Q02246 
Go to UniProtKB:  Q02246
PHAROS:  Q02246
GTEx:  ENSG00000184144 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02246
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.238 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.804α = 90
b = 106.916β = 90
c = 161.366γ = 90
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
MAR345data collection
XDSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-11-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-10-18
    Changes: Refinement description
  • Version 1.3: 2023-12-27
    Changes: Data collection, Database references