2OCZ

The Structure of a Putative 3-Dehydroquinate Dehydratase from Streptococcus pyogenes.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Structure of a Putative 3-Dehydroquinate Dehydratase from Streptococcus pyogenes.

Cuff, M.E.Duggan, E.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-dehydroquinate dehydratase
A
231Streptococcus pyogenes serotype M1Mutation(s): 0 
Gene Names: aroD
EC: 4.2.1.10
Find proteins for P63590 (Streptococcus pyogenes serotype M1)
Go to UniProtKB:  P63590
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.175 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 81.688α = 90.00
b = 81.688β = 90.00
c = 85.364γ = 90.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
RESOLVEphasing
SHELXEmodel building
DMphasing
HKL-3000phasing
HKL-2000data reduction
SHELXDphasing
MLPHAREphasing
CCP4phasing
Omodel building
SOLVEphasing
SBC-Collectdata collection
REFMACrefinement
HKL-2000data scaling
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-01-23
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance