Download MendeleyCrystal structure of hypothetical protein (NP_388456.1) from Bacillus subtilis at 1.75 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2OC6
Crystal structure of a protein from the duf1801 family (ydhg, bsu05750) from bacillus subtilis at 1.75 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2OC6/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-12-20 Released: 2007-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.217
- R-Value Work: 0.173
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YdhG protein | 124 | Bacillus subtilis | Mutation(s): 3 Gene Names: ydhG |  | |
UniProt | |||||
Find proteins for Q797E6 (Bacillus subtilis (strain 168)) Explore Q797E6 Go to UniProtKB: Q797E6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q797E6 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], J [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | G [auth A] H [auth A] I [auth A] K [auth B] L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | E [auth A], F [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.217
- R-Value Work: 0.173
- R-Value Observed: 0.175
- Space Group: P 1 2 1
- Diffraction Data: https://doi.org/10.18430/M32OC6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.782 | α = 90 |
| b = 46.903 | β = 110.05 |
| c = 64.568 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHELX | phasing |
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| autoSHARP | phasing |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-16 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-01-16
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
