Download MendeleyThe DHQ-dehydroshikimate-SDH-shikimate-NADP(H) Complex: Insights into Metabolite Transfer in the Shikimate Pathway
Singh, S.A., Christendat, D.(2007) Cryst Growth Des 7: 2153-2160
- DOI: 10.1021/cg7007107
2O7S
Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)
- DOI: 10.2210/pdb2O7S/pdb
- Classification: OXIDOREDUCTASE, TRANSFERASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-12-11 Released: 2007-11-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.233
- R-Value Observed: 0.269
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | A | 523 | Arabidopsis thaliana | Mutation(s): 2 Gene Names: EMB3004, At3g06350, F24P17.18 EC: 1.1.1.25 (PDB Primary Data), 4.2.1.10 (PDB Primary Data) |  |
Find proteins for Q9SQT8 (Arabidopsis thaliana) Explore Q9SQT8 Go to UniProtKB: Q9SQT8 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | F [auth A] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | Ligand Interaction | |
| DHK Query on DHK | C [auth A], E [auth A] | 3-DEHYDROSHIKIMATE C7 H10 O5 YVYKOQWMJZXRRM-UYFOZJQFSA-N |  | Ligand Interaction | |
| TLA Query on TLA | D [auth A] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.233
- R-Value Observed: 0.269
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.447 | α = 90 |
| b = 97.447 | β = 90 |
| c = 116.43 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| CNS | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Deposited Date: 2006-12-11
- Released Date: 2007-11-20 Deposition Author(s): Christendat, D., Singh, S.A.
Revision History (Full details and data files)
- Version 1.0: 2007-11-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance
