2NX8

The crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes

Lee, W.-H.Kim, Y.K.Nam, K.H.Priyadarshi, A.Lee, E.H.Kim, E.E.Jeon, Y.H.Cheong, C.Hwang, K.Y.

(2007) Proteins 68: 1016-1019


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
TRNA-specific adenosine deaminaseA179Streptococcus pyogenes serotype M6Mutation(s): 2 
EC: 3.5.4 (PDB Primary Data), 3.5.4.33 (UniProt)
Find proteins for Q5XE14 (Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394))
Explore Q5XE14 
Go to UniProtKB:  Q5XE14
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
C [auth A]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.214 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.091α = 90
b = 80.091β = 90
c = 81.104γ = 90
Software Package:
Software NamePurpose
CNSrefinement
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-08-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Derived calculations, Version format compliance