2NX8

The crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes

Lee, W.-H.Kim, Y.K.Nam, K.H.Priyadarshi, A.Lee, E.H.Kim, E.E.Jeon, Y.H.Cheong, C.Hwang, K.Y.

(2007) Proteins 68: 1016-1019


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TRNA-specific adenosine deaminase
A
179Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)Mutation(s): 2 
Gene Names: tadA
EC: 3.5.4.33
Find proteins for Q5XE14 (Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394))
Go to UniProtKB:  Q5XE14
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.214 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 80.091α = 90.00
b = 80.091β = 90.00
c = 81.104γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
SOLVEphasing
ADSCdata collection
CNSrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Derived calculations, Version format compliance