2NU1 | pdb_00002nu1

Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I and Tyr18I

PDB DOI: https://doi.org/10.2210/pdb2NU1/pdb

Classification: HYDROLASE
Organism(s): Streptomyces griseus, Meleagris gallopavo
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-11-08 Released: 2006-11-21
Deposition Author(s): Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Huang, K., Laskowski Jr., M., James, M.N.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Work:
0.163 (Depositor), 0.151 (DCC)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 2NU1

This is version 1.5 of the entry. See complete history.

Literature

Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I and Tyr18I

Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Huang, K., Laskowski Jr., M., James, M.N.G.

To be published.

Macromolecule Content

Total Structure Weight: 24.26 kDa
Atom Count: 1,866
Modeled Residue Count: 236
Deposited Residue Count: 236
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Streptogrisin B	A [auth E]	185	Streptomyces griseus	Mutation(s): 0 EC: 3.4.21.81
UniProt
Find proteins for P00777 (Streptomyces griseus) Explore P00777 Go to UniProtKB: P00777
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00777
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ovomucoid	B [auth I]	51	Meleagris gallopavo	Mutation(s): 1
UniProt
Find proteins for P68436 (Meleagris ocellata) Explore P68436 Go to UniProtKB: P68436
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68436
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Work: 0.163 (Depositor), 0.151 (DCC)
R-Value Observed: 0.163 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.44	α = 90
b = 54.72	β = 119.01
c = 45.6	γ = 90

Software Package:

Software Name	Purpose
DIP	data collection
X-PLOR	model building
TNT	refinement
DENZO	data reduction
SCALEPACK	data scaling
X-PLOR	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-11-21

Deposition Author(s):

Laskowski Jr., M.

Revision History (Full details and data files)

Version 1.0: 2006-11-21
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-10-20
Changes: Database references
Version 1.4: 2023-08-30
Changes: Data collection, Refinement description
Version 1.5: 2024-11-20
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.