2NA1

ULD complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

BMI1 regulates PRC1 architecture and activity through homo- and hetero-oligomerization.

Gray, F.Cho, H.J.Shukla, S.He, S.Harris, A.Boytsov, B.Jaremko, M.Jaremko, M.Demeler, B.Lawlor, E.R.Grembecka, J.Cierpicki, T.

(2016) Nat Commun 7: 13343-13343

  • DOI: https://doi.org/10.1038/ncomms13343
  • Primary Citation of Related Structures:  
    2NA1, 5FR6

  • PubMed Abstract: 

    BMI1 is a core component of the polycomb repressive complex 1 (PRC1) and emerging data support a role of BMI1 in cancer. The central domain of BMI1 is involved in protein-protein interactions and is essential for its oncogenic activity. Here, we present the structure of BMI1 bound to the polyhomeotic protein PHC2 illustrating that the central domain of BMI1 adopts an ubiquitin-like (UBL) fold and binds PHC2 in a β-hairpin conformation. Unexpectedly, we find that the UBL domain is involved in homo-oligomerization of BMI1. We demonstrate that both the interaction of BMI1 with polyhomeotic proteins and homo-oligomerization via UBL domain are necessary for H2A ubiquitination activity of PRC1 and for clonogenic potential of U2OS cells. Here, we also emphasize need for joint application of NMR spectroscopy and X-ray crystallography to determine the overall structure of the BMI1-PHC2 complex.


  • Organizational Affiliation

    Department of Pathology, University of Michigan, Ann Arbor, Michigan 48109, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Polycomb complex protein BMI-1, Polyhomeotic-like 2155Mus musculusHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: Phc2BMI1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9QWH1 (Mus musculus)
Explore Q9QWH1 
Go to UniProtKB:  Q9QWH1
Find proteins for P35226 (Homo sapiens)
Explore P35226 
Go to UniProtKB:  P35226
GTEx:  ENSG00000168283 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ9QWH1P35226
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-16
    Type: Initial release
  • Version 1.1: 2016-12-28
    Changes: Database references
  • Version 1.2: 2018-01-31
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-05-15
    Changes: Data collection, Database references